Software:USeq

From BioInfo

USeq is a collection of 100+ command line java applications for analyzing next generation sequencing data from ChIP-Seq, RNA-Seq, and Methyl-Seq experiments. It contains a variety of utilities for intraconverting between file formats, working with SAM/BAM files, and visualizing data in genome browsers.

[edit] Links

• Getting started with USeq
• Download USeq
• List of applications
• User Guide
  • Extended junction RNA-Seq guide
  • Methylome analysis guide

[edit] Who to contact regarding:

• How to report a problem with USeq
• Sourceforge Bug Reports
• Sourceforge Feature Requests
• Sourceforge General Help Requests
• Post questions to the USeq User Group